PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005817
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 77aa    MW: 8363.22 Da    PI: 6.493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005817genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.2e-124670327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  ++C +++rtG C yG++C+++H++
  DCAR_005817 46 VPNCAYYMRTGSCGYGNKCRYNHPR 70
                 799********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.6E-44370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1884371IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-94570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-74771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-64970IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MELYGHSGNG SQTDQWAAPG QETGLEESMM RLGLLGGELY PERGGVPNCA YYMRTGSCGY  60
GNKCRYNHPR DRNSVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776617.12e-28PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
RefseqXP_016506830.12e-28PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W917e-25C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLW9SLY67e-26W9SLY6_9R
STRINGPGSC0003DMT4000136477e-25(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.23e-26C3H family protein